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If a site_config file does not exist for your system, you should do the following:
Note the name of the site_config file that make tells you it is going to use. This is the file you must edit.
Look in the site_config directory in the distribution. You will find there the machine specific files for a range of compilers and systems. For example, COMPAQ-f95-on-OSF1 contains compiler options for the COMPAQ f95 compiler on the OSF1 (Tru64) operating system.
Some of the files in site_config may correspond to your compiler, but not your system. If this is the case, start by using a file which corresponds to your compiler as a starting guess for the compile-options you might need. Use your editor to insert these compile-options into the generic site_config file made by Makefile.pl.
Whether you do or don't find appropriate compile-options in the site_config directory corresponding to your compiler, you should read the chapter called Compiling customised versions of TONTO>, especially the Section called Which Fortran compiler options to use? in the chapter called Compiling customised versions of TONTO>. The latter section contains detailed information about the meaning of all the typical compiler switches on the COMPAQ machine, so you'll know which ones to look for on your system.